ImmuneDB
stable

Getting Started

  • Introduction
  • Installing with Docker (recommended)
  • Installing Locally (advanced)

Running the Pipeline

  • Running the Example Pipeline
  • Running the Pipeline on Your Data
  • Modifying the Database
  • Running in the Background

Using a Database

  • Exporting Data to Files
  • Querying with SQL
  • Python API

Other

  • Referencing ImmuneDB
  • Related Publications
ImmuneDB
  • Docs »
  • Related Publications
  • Edit on GitHub

Related PublicationsΒΆ

Rosenfeld, A.M., Meng, W., Chen, D.Y., Zhang, B., Granot, T., Farber, D.L., Hershberg, U., and Prak, E.T.L., Computational Evaluation of B-Cell Clone Sizes in Bulk Populations. Frontiers in Immunology 9 (2018).

Vander Heiden, J.A., Marquez, S., Marthandan, N., Bukhari, S.A.C., Busse, C. E., Corrie, B., Hershberg, U., Kleinstein, S.H., Matsen, F.A., Ralph, D.K., Rosenfeld, A.M., Schramm, C.A., Christley, S., and Laserson, U., AIRR Community Standardized Representations for Annotated Immune Repertoires. Frontiers in Immunology 9 (2018).

Zhang, B., Meng, W., Luning Prak, E.T. and Hershberg U. (2015) Discrimination of germline V genes at different sequencing lengths and mutational burdens: A new tool for identifying and evaluating the reliability of V gene assignment. Journal of Immunological Methods 427: 105-116

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© Copyright 2018, Drexel University Systems Immunology Lab Revision 3f2a11ac.

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